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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130371963_130372713_F

Intron Information:

Intron Rank:
139679
Intron Class:
major
Intron Phase:
Intron Coordinates:
130371963 - 130372713
Intron Length:
751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCATTT
5'SS Class:
major
3'SS Sequence:
TCTTTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
TGTATATGAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.2
72.7
39.6
Major BPS
66.1
0.4
1
73
31.5
Major PPT
89.3
0.88
0.6
88.9
20.3
Minor 5ss
48.3
-0.1
3.2
74
42.4
Minor BPS
49.1
-0
1.7
62.97
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025083
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029312
130351722 - 130373142
21421