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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13038208_13038587_R

Intron Information:

Intron Rank:
140696
Intron Class:
major
Intron Phase:
Intron Coordinates:
13038208 - 13038587
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CATTTATTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTTTTAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.9
30
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.2
0.75
0.8
76.7
36.1
Minor 5ss
34.7
-1.7
3.2
41.8
38.8
Minor BPS
65.1
0.55
1.6
81.14
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023049
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018485
12990279 - 13039265
48987
ENSAPLT00000037323
12995163 - 13039265
44103
ENSAPLT00000033472
13032646 - 13039265
6620
ENSAPLT00000026923
13032646 - 13039265
6620