About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13038208_13093764_R

Intron Information:

Intron Rank:
140701
Intron Class:
major
Intron Phase:
Intron Coordinates:
13038208 - 13093764
Intron Length:
55557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CATTTATTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTTTTAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.2
0.75
0.8
76.7
36.1
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
65.1
0.55
1.6
81.14
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023049
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019408
12981687 - 13094174
112488