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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130431340_130439957_R

Intron Information:

Intron Rank:
153942
Intron Class:
major
Intron Phase:
Intron Coordinates:
130431340 - 130439957
Intron Length:
8618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTGGTTCACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGTAT
U12 Branch Point Sequence:
TATGTATTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
63.7
0.34
1.4
63.7
43.9
Major PPT
67.3
0.39
1
61.2
39.3
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
48.5
-0
1.9
69.42
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030304
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017714
130259042 - 130440127
181086