Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130619544_130622871_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

130619544 - 130622871

Intron Length:

3328

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTATGCAAA

5'SS Class:

major

3'SS Sequence:

TTTTCTTCCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTGAT

U12 Branch Point Sequence:

TGACCGTGAATA

Flanking Amino Acid:

PQGAFVHKENGFTYFYKGKE

Intron Amino Acid Position:

494

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.1

0.59

68.6

37.7

Major BPS

82.5

0.81

0.8

71.4

36.6

Major PPT

89.3

0.88

0.6

88.8

20.5

Minor 5ss

44.9

-0.5

2.6

53.5

45.8

Minor BPS

47.1

-0.2

2.1

59.77

39.7

Associated Gene:

Gene:

MMP16

Ensembl Gene ID:

ENSAPLG00000015440

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016086

130619209 - 130798617

179409