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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130622973_130627471_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
130622973 - 130627471
Intron Length:
4499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTGGTATA
5'SS Class:
major
3'SS Sequence:
ATTGGAGGTAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAAAAAA
U12 Branch Point Sequence:
TTGGAGGTAAAG
Flanking Amino Acid:
VGKTYFFKGDSEKKKSMDPG
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.2
79.2
36.3
Major BPS
47.9
-0.1
0.9
51.7
28.4
Major PPT
49.1
-0
1.2
45.1
44.8
Minor 5ss
34.3
-1.8
2.9
42.6
44.3
Minor BPS
35.7
-1.2
2.6
44.94
46.9

Associated Gene:

Gene:
MMP16
Ensembl Gene ID:
ENSAPLG00000015440
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016086
130619209 - 130798617
179409