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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130690974_130702860_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
130690974 - 130702860
Intron Length:
11887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTAAAA
5'SS Class:
major
3'SS Sequence:
CTGTTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TAAAATTTAATC
Flanking Amino Acid:
QKWQHKHITYSIKNVTPKVG
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
69.9
35.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
86.6
0.82
0.8
84.6
30.3
Minor 5ss
31.8
-2.1
3.1
40.4
45.3
Minor BPS
56
0.17
1.5
62.37
36.6

Associated Gene:

Gene:
MMP16
Ensembl Gene ID:
ENSAPLG00000015440
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018795
130627345 - 130799527
172183
ENSAPLT00000016086
130619209 - 130798617
179409
ENSAPLT00000040108
130619209 - 130799527
180319