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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130702984_130710095_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
130702984 - 130710095
Intron Length:
7112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
CTGTTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GCTGTTTCAACT
Flanking Amino Acid:
MTGKVDRNTIDWMKKPRCGV
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
75.1
35.1
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
85.6
0.8
0.8
80.6
31.4
Minor 5ss
37.3
-1.4
2.7
42.3
38.4
Minor BPS
52.7
0.16
1.7
67.87
43.5

Associated Gene:

Gene:
MMP16
Ensembl Gene ID:
ENSAPLG00000015440
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018795
130627345 - 130799527
172183
ENSAPLT00000016086
130619209 - 130798617
179409
ENSAPLT00000040108
130619209 - 130799527
180319