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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130710245_130798485_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
130710245 - 130798485
Intron Length:
88241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTCTATTTAATA
Flanking Amino Acid:
CKAEQYFNVEVWLQKYGYLP
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.7
33.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
80.3
0.68
0.9
73.9
35.4
Minor 5ss
44.1
-0.6
2.8
56.9
47.3
Minor BPS
69.3
0.6
1.4
75.77
36

Associated Gene:

Gene:
MMP16
Ensembl Gene ID:
ENSAPLG00000015440
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040108
130619209 - 130799527
180319
ENSAPLT00000018795
130627345 - 130799527
172183
ENSAPLT00000016086
130619209 - 130798617
179409