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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130910126_130912582_R

Intron Information:

Intron Rank:
145882
Intron Class:
major
Intron Phase:
Intron Coordinates:
130910126 - 130912582
Intron Length:
2457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTCATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTTTCTACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
100
1.24
0.5
100
0
Major PPT
74.7
0.56
0.9
70.3
35.4
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
49.3
-0
1.9
65.77
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025871
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017495
130909910 - 130922325
12416