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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130912622_130921879_R

Intron Information:

Intron Rank:
145883
Intron Class:
major
Intron Phase:
Intron Coordinates:
130912622 - 130921879
Intron Length:
9258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTACATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACCAAA
U12 Branch Point Sequence:
TTCTCCTACATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
54.9
0.12
1.2
63
32
Major PPT
77.5
0.62
0.9
73.8
35.2
Minor 5ss
32.2
-2
3
40.7
45.1
Minor BPS
56.9
0.3
2.1
79.08
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025871
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017495
130909910 - 130922325
12416