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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130919287_130968220_F

Intron Information:

Intron Rank:
135609
Intron Class:
major
Intron Phase:
Intron Coordinates:
130919287 - 130968220
Intron Length:
48934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGATCT
5'SS Class:
major
3'SS Sequence:
TTTATTTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
TCTGCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
71.2
35.2
Major BPS
76.2
0.65
1
67
39.8
Major PPT
84.6
0.78
0.7
78
36.4
Minor 5ss
34.7
-1.7
3.1
40.6
45.1
Minor BPS
59.4
0.37
1.7
74.81
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022963
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026938
130918480 - 130971058
52579