About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130968410_130972763_F

Intron Information:

Intron Rank:
135607
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
130968410 - 130972763
Intron Length:
4354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCCCAG
5'SS Class:
weak_major
3'SS Sequence:
TCCATCACCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTTTCCATCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.2
0.36
1.2
52.4
46.1
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
68.6
0.42
0.9
61.5
33.5
Minor 5ss
48.8
-0.1
2.6
64.4
47
Minor BPS
66.4
0.5
2
83.65
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022963
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026481
130968221 - 131003899
35679