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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130972800_130992389_F

Intron Information:

Intron Rank:
135613
Intron Class:
major
Intron Phase:
Intron Coordinates:
130972800 - 130992389
Intron Length:
19590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TTATTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GGTTTATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.5
0.84
0.8
85.6
33.6
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
50.7
0.1
1.8
70.36
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022963
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045293
130972534 - 130992495
19962