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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130972800_131003503_F

Intron Information:

Intron Rank:
135608
Intron Class:
major
Intron Phase:
Intron Coordinates:
130972800 - 131003503
Intron Length:
30704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
ATATTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TATTTTACAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
87.1
0.83
0.8
85.3
34.4
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
48.4
-0
1.8
71.5
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022963
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026481
130968221 - 131003899
35679