Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1311523_1313846_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1311523 - 1313846

Intron Length:

2324

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATC|GTAAGACTT

5'SS Class:

major

3'SS Sequence:

GTGTGCTTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GATTCAC

U12 Branch Point Sequence:

CCTTTCCTAAGG

Flanking Amino Acid:

WGLRAAKDLPSNTFVLEYCG

Intron Amino Acid Position:

122

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.7

0.42

1.3

68.2

42.8

Major BPS

64.5

0.36

1.2

69.3

37.7

Major PPT

76.4

0.59

69.4

41.7

Minor 5ss

39.4

-1.2

3.3

58.1

40.5

Minor BPS

-0.2

2.1

54.84

46.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004917

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005096

1303326 - 1324123

20798