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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_131162313_131164139_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
131162313 - 131164139
Intron Length:
1827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTGTT
5'SS Class:
major
3'SS Sequence:
ACTGTGCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TGGTTGTAAACT
Flanking Amino Acid:
SSVESIISPKVKMALRTSGH
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
77.9
36.9
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
70.4
0.46
0.9
66.3
40.2
Minor 5ss
51
0.03
2.9
75.5
40.6
Minor BPS
48.8
-0
2.3
71.67
45.4

Associated Gene:

Gene:
RAD21
Ensembl Gene ID:
ENSAPLG00000009130
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009534
131162139 - 131178069
15931