About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_131167679_131168604_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
131167679 - 131168604
Intron Length:
926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAAATCT
5'SS Class:
major
3'SS Sequence:
CATATTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TTGGCATTTATA
Flanking Amino Acid:
NISILQDNDFGDFGMDDREM
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
68.8
36.7
Major BPS
71.6
0.54
1
72
33.1
Major PPT
79
0.65
0.9
69.6
41.2
Minor 5ss
40.4
-1.1
3.2
58.1
46
Minor BPS
48.7
-0.1
2
63.97
42.5

Associated Gene:

Gene:
RAD21
Ensembl Gene ID:
ENSAPLG00000009130
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009534
131162139 - 131178069
15931