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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_131168809_131169413_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
131168809 - 131169413
Intron Length:
605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTTTG
5'SS Class:
major
3'SS Sequence:
ATTATCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCATATTATCT
Flanking Amino Acid:
FGEGNDGGILDDKLLSNNDG
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
71.4
41.2
Major BPS
100
1.24
0.5
100
0
Major PPT
84.7
0.78
0.8
81.7
35.3
Minor 5ss
49.5
-0
2.4
58.1
46.5
Minor BPS
51
0.11
1.9
73.37
43.4

Associated Gene:

Gene:
RAD21
Ensembl Gene ID:
ENSAPLG00000009130
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009534
131162139 - 131178069
15931