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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_131169862_131171110_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
131169862 - 131171110
Intron Length:
1249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
AAAATCTCAACAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CCTTCATTAATT
Flanking Amino Acid:
AFALEPIDITVKETKAKRKR
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
81.1
26.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
59.2
0.21
1
52.2
41.6
Minor 5ss
29.7
-2.3
2.6
30.1
36.9
Minor BPS
69.4
0.69
1.6
80.74
41.5

Associated Gene:

Gene:
RAD21
Ensembl Gene ID:
ENSAPLG00000009130
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009534
131162139 - 131178069
15931