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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_131171335_131171643_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
131171335 - 131171643
Intron Length:
309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
AATAATATAACC
Flanking Amino Acid:
QPLWNNRLLKLFTRCLTPLV
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
69.1
0.48
1
70
32.1
Major PPT
83.1
0.74
0.7
77.9
24.2
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
48.6
-0.1
1.8
61.22
37.1

Associated Gene:

Gene:
RAD21
Ensembl Gene ID:
ENSAPLG00000009130
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009534
131162139 - 131178069
15931