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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_131199307_131200081_R

Intron Information:

Intron Rank:
133888
Intron Class:
major
Intron Phase:
Intron Coordinates:
131199307 - 131200081
Intron Length:
775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTTTGTATT
5'SS Class:
major
3'SS Sequence:
ATCTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
AGTTCTGTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.2
77.4
36.9
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
84.9
0.78
0.8
76.9
36.7
Minor 5ss
44.3
-0.6
2.5
58.3
40.2
Minor BPS
52.9
0.17
2
73.41
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019295
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024661
131198581 - 131200901
2321