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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_131205142_131206050_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
131205142 - 131206050
Intron Length:
909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTAATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AAGTATTTAATT
Flanking Amino Acid:
NPHHFFIATQDQDLANKVKK
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
30.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
86.2
0.81
0.8
80.2
36.9
Minor 5ss
34.7
-1.7
3.3
50.4
46
Minor BPS
62.4
0.47
1.4
72.39
38.7

Associated Gene:

Gene:
UTP23
Ensembl Gene ID:
ENSAPLG00000028663
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044157
131203926 - 131207916
3991