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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_131206226_131207728_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
131206226 - 131207728
Intron Length:
1503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTCGGTACG
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TCATTGTTACTT
Flanking Amino Acid:
LGGPTQLCTTRCVLKELESL
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.5
0.27
1.4
57.5
47.1
Major BPS
70
0.5
1
67
39.8
Major PPT
89.5
0.89
0.7
88.9
28.2
Minor 5ss
30.6
-2.2
2.8
35.7
40.5
Minor BPS
47.5
-0.1
2.2
67.41
44.2

Associated Gene:

Gene:
UTP23
Ensembl Gene ID:
ENSAPLG00000028663
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044157
131203926 - 131207916
3991