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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_131215619_131215805_F

Intron Information:

Intron Rank:
134682
Intron Class:
major
Intron Phase:
Intron Coordinates:
131215619 - 131215805
Intron Length:
187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGGGTATC
5'SS Class:
major
3'SS Sequence:
GGTTCGCTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
CAGCCATTAAGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
72.2
39.5
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
68.5
0.42
1
58
43.1
Minor 5ss
33
-1.9
3.1
36.5
40.9
Minor BPS
45.9
-0.4
2
47.13
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022426
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032377
131214517 - 131216666
2150