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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_131239256_131284798_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
131239256 - 131284798
Intron Length:
45543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGTT
5'SS Class:
strong_major
3'SS Sequence:
GTATTTAATCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGTATTTAATC
Flanking Amino Acid:
HTEDDADFDEVQYQMEMMRS
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
78.8
35.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
67.8
0.4
1
60.3
44.9
Minor 5ss
35.2
-1.7
3.8
55.5
48.6
Minor BPS
68.8
0.57
1.4
74.88
36.1

Associated Gene:

Gene:
EIF3H
Ensembl Gene ID:
ENSAPLG00000009493
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043651
131218565 - 131299082
80518
ENSAPLT00000028446
131218565 - 131301353
82789
ENSAPLT00000009931
131218565 - 131300154
81590