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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_131284967_131286442_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
131284967 - 131286442
Intron Length:
1476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTTAGTATG
5'SS Class:
major
3'SS Sequence:
TTTTTGTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TCTTCCTCCATT
Flanking Amino Acid:
AIEESVVLIYDPIKTAQGSL
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
74.2
42.1
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
92.5
0.96
0.7
87.5
30
Minor 5ss
36.2
-1.6
2.7
45.3
42.2
Minor BPS
59.5
0.38
2
79.83
42.7

Associated Gene:

Gene:
EIF3H
Ensembl Gene ID:
ENSAPLG00000009493
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009931
131218565 - 131300154
81590
ENSAPLT00000043651
131218565 - 131299082
80518
ENSAPLT00000028446
131218565 - 131301353
82789