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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_131288068_131295939_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
131288068 - 131295939
Intron Length:
7872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTATTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTTTTTGTATTT
Flanking Amino Acid:
DRHELLSLASSNHLGKSLQL
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.1
1.13
0.6
93.5
20.3
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
83.8
0.76
0.8
82.4
34
Minor 5ss
38.4
-1.3
2.8
52.3
44.3
Minor BPS
50.7
0.1
2.2
78.46
39

Associated Gene:

Gene:
EIF3H
Ensembl Gene ID:
ENSAPLG00000009493
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009931
131218565 - 131300154
81590
ENSAPLT00000043651
131218565 - 131299082
80518
ENSAPLT00000028446
131218565 - 131301353
82789