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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_131335632_131360548_R

Intron Information:

Intron Rank:
152529
Intron Class:
major
Intron Phase:
Intron Coordinates:
131335632 - 131360548
Intron Length:
24917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTATTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
CATTTTCTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
79.7
29.1
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
85.1
0.79
0.7
78.5
34.6
Minor 5ss
41.6
-0.9
3.1
56.5
47.5
Minor BPS
45.7
-0.3
1.8
55.04
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029642
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047231
131335291 - 131360859
25569