About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_131337364_131346195_R

Intron Information:

Intron Rank:
152527
Intron Class:
major
Intron Phase:
Intron Coordinates:
131337364 - 131346195
Intron Length:
8832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
CTGCCCTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
AGCTCTTTACAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
75.8
33.8
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
74.9
0.56
0.8
65.6
36.1
Minor 5ss
29.5
-2.3
3.4
38.8
46.5
Minor BPS
50.7
0.02
1.7
59.4
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029642
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040935
131337163 - 131360859
23697