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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_131343673_131360548_R

Intron Information:

Intron Rank:
152525
Intron Class:
major
Intron Phase:
Intron Coordinates:
131343673 - 131360548
Intron Length:
16876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATTA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCATAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCCCATAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
79.7
29.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
67.1
0.38
1
62.7
36.5
Minor 5ss
41.6
-0.9
3.1
56.5
47.5
Minor BPS
65.1
0.45
1.7
78.86
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029642
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034592
131342466 - 131360859
18394