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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_131351690_131360548_R

Intron Information:

Intron Rank:
152526
Intron Class:
major
Intron Phase:
Intron Coordinates:
131351690 - 131360548
Intron Length:
8859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCACAT
U12 Branch Point Sequence:
CCTGCTGGGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
79.7
29.1
Major BPS
53.7
0.09
1.1
60.7
37.6
Major PPT
88.7
0.87
0.6
88
21.8
Minor 5ss
41.6
-0.9
3.1
56.5
47.5
Minor BPS
41.4
-0.6
2.1
49.8
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029642
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038948
131350497 - 131360859
10363