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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_131357684_131366176_F

Intron Information:

Intron Rank:
139867
Intron Class:
major
Intron Phase:
Intron Coordinates:
131357684 - 131366176
Intron Length:
8493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTTAT
U12 Branch Point Sequence:
GTAATGTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
72.5
0.56
1.2
63.4
44
Major PPT
79.4
0.66
0.9
73.5
37
Minor 5ss
42.4
-0.8
3.1
59.1
45.6
Minor BPS
43
-0.5
2.1
52.06
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025188
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032176
131357351 - 131368076
10726