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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1313976_1314894_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1313976 - 1314894
Intron Length:
919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCCCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
ATTTGTTCCATT
Flanking Amino Acid:
DCLNRLLMIECSSRCPNGDY
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
73.2
37.4
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
78
0.63
0.7
77.4
24.6
Minor 5ss
31.6
-2.1
2.9
39.6
39.8
Minor BPS
45.4
-0.2
2.3
69.9
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004917
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005096
1303326 - 1324123
20798