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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_131498941_131504799_R

Intron Information:

Intron Rank:
139416
Intron Class:
major
Intron Phase:
Intron Coordinates:
131498941 - 131504799
Intron Length:
5859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TATCAACCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATCAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.7
31.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
71.7
0.49
0.9
63.6
37.7
Minor 5ss
30
-2.3
3.2
38.4
40.8
Minor BPS
58.5
0.25
1.8
72.76
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022483
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045926
131498904 - 131506206
7303