Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_131504888_131506062_R

Intron Information:

Intron Rank:

139414

Intron Class:

major

Intron Phase:

Intron Coordinates:

131504888 - 131506062

Intron Length:

1175

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTTAC

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCTATACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

TTTTCTCTATAC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.7

0.91

0.8

80.2

28.3

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

85.3

0.79

0.8

80.7

30.2

Minor 5ss

40.6

-1

2.8

49.4

41.4

Minor BPS

52.1

0.05

72.34

38.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022483

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045926

131498904 - 131506206

7303

ENSAPLT00000035317

131503536 - 131506400

2865