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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_131579684_131580841_R

Intron Information:

Intron Rank:
148059
Intron Class:
major
Intron Phase:
Intron Coordinates:
131579684 - 131580841
Intron Length:
1158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTGCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGGGCTTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
79.5
29.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
81.2
0.7
0.9
80.8
36.5
Minor 5ss
47.6
-0.2
2.8
64.6
46.8
Minor BPS
55.4
0.17
1.7
64.03
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026949
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021504
131577527 - 131580925
3399