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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_131580926_131582073_R

Intron Information:

Intron Rank:
148060
Intron Class:
major
Intron Phase:
Intron Coordinates:
131580926 - 131582073
Intron Length:
1148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAGAG
U12 Branch Point Sequence:
CTTTTCTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
44.3
-0.3
1.5
41.1
39.7
Major PPT
88.7
0.87
0.7
83.3
25.2
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
56.2
0.06
1.8
63.72
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026949
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047523
131580779 - 131630709
49931
ENSAPLT00000035324
131580779 - 131582786
2008
ENSAPLT00000030599
131580779 - 131584031
3253