Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_131582176_131630550_R

Intron Information:

Intron Rank:

148067

Intron Class:

major

Intron Phase:

Intron Coordinates:

131582176 - 131630550

Intron Length:

48375

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGACA

5'SS Class:

strong_major

3'SS Sequence:

TTTATACACTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTTAT

U12 Branch Point Sequence:

GGCCCCATAAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.8

0.96

0.8

81.4

32.1

Major BPS

78.7

0.71

1.2

71.7

44.6

Major PPT

0.27

1.1

65.9

39.3

Minor 5ss

32.5

-2

3.1

40.7

45.3

Minor BPS

49.8

0.07

1.8

65.97

43.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026949

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047523

131580779 - 131630709

49931