About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_131609953_131645652_F

Intron Information:

Intron Rank:
147452
Intron Class:
major
Intron Phase:
Intron Coordinates:
131609953 - 131645652
Intron Length:
35700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
CTTGTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
CAACTCATAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
81.9
0.72
0.9
76.3
37.7
Minor 5ss
38.3
-1.3
2.8
51.5
39
Minor BPS
46.1
-0.2
1.9
60.12
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029406
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022771
131609922 - 131653290
43369