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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_131730985_131734026_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
131730985 - 131734026
Intron Length:
3042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTGAT
5'SS Class:
major
3'SS Sequence:
TTCTCTGTGGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTCTCT
Flanking Amino Acid:
YEVNAGYDFTNMVRKKNPPL
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
76.9
31.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
70.9
0.47
1
69
37
Minor 5ss
42.2
-0.9
3.2
57.4
41.7
Minor BPS
47.9
-0
3.6
87.39
38.7

Associated Gene:

Gene:
TRPS1
Ensembl Gene ID:
ENSAPLG00000009857
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022011
131666343 - 131900671
234329
ENSAPLT00000040704
131693970 - 131900671
206702
ENSAPLT00000010263
131666343 - 131900671
234329
ENSAPLT00000040036
131730826 - 131903809
172984
ENSAPLT00000035558
131675110 - 131900671
225562
ENSAPLT00000025265
131692872 - 131900671
207800
ENSAPLT00000041060
131715390 - 131900671
185282