Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_131747868_131755692_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

131747868 - 131755692

Intron Length:

7825

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACAGTGA

5'SS Class:

major

3'SS Sequence:

CGTTTCCTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CGTTAAC

U12 Branch Point Sequence:

CTGGCGTTAACG

Flanking Amino Acid:

QVEEEISRHYRRVHNCYKCR

Intron Amino Acid Position:

699

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.1

0.47

1.1

60.1

41.3

Major BPS

62.1

0.3

1.2

38.7

Major PPT

82.5

0.73

0.8

73.4

37.1

Minor 5ss

34.4

-1.8

3.5

47.2

48.2

Minor BPS

49.8

-0.1

2.3

58.45

49.1

Associated Gene:

Gene:

TRPS1

Ensembl Gene ID:

ENSAPLG00000009857

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025265

131692872 - 131900671

207800

ENSAPLT00000041060

131715390 - 131900671

185282

ENSAPLT00000022011

131666343 - 131900671

234329

ENSAPLT00000040704

131693970 - 131900671

206702

ENSAPLT00000010263

131666343 - 131900671

234329

ENSAPLT00000040036

131730826 - 131903809

172984

ENSAPLT00000035558

131675110 - 131900671

225562