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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_131918296_131946482_F

Intron Information:

Intron Rank:
149009
Intron Class:
major
Intron Phase:
Intron Coordinates:
131918296 - 131946482
Intron Length:
28187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TTTACACTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
84.7
0.78
0.7
80.6
31.5
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
55.1
0.14
2
73.51
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030145
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031926
131918109 - 131951573
33465