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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_131946624_131951315_F

Intron Information:

Intron Rank:
149010
Intron Class:
major
Intron Phase:
Intron Coordinates:
131946624 - 131951315
Intron Length:
4692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CATTCCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TACATTTTAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.1
1.09
0.7
87
30
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.3
0.68
0.8
73.6
31
Minor 5ss
35.9
-1.6
3
49.5
46.7
Minor BPS
55.7
0.16
1.4
60.9
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030145
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039112
131946483 - 131954805
8323
ENSAPLT00000031926
131918109 - 131951573
33465