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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_131951491_131953660_F

Intron Information:

Intron Rank:
149012
Intron Class:
major
Intron Phase:
Intron Coordinates:
131951491 - 131953660
Intron Length:
2170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTATACTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
TATTCTATGATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1.1
83
36.1
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
80.1
0.68
0.9
73.5
36.6
Minor 5ss
35.7
-1.6
2.6
42.8
44.1
Minor BPS
60.6
0.33
1.5
71.88
33.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030145
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039112
131946483 - 131954805
8323