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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_132019935_132021301_F

Intron Information:

Intron Rank:
140637
Intron Class:
major
Intron Phase:
Intron Coordinates:
132019935 - 132021301
Intron Length:
1367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTTAC
5'SS Class:
major
3'SS Sequence:
ATCTGTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ATATCTCTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
71.1
35.6
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
79.3
0.66
0.8
77.3
36.4
Minor 5ss
39.2
-1.2
3.1
48.3
42.5
Minor BPS
54.4
0.22
1.9
76.09
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025722
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023551
132019833 - 132022256
2424