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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_132086232_132086740_F

Intron Information:

Intron Rank:
149627
Intron Class:
major
Intron Phase:
Intron Coordinates:
132086232 - 132086740
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCAA
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
AGTGTCTTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
68.7
37.6
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
90.9
0.92
0.7
88.9
28.1
Minor 5ss
39.7
-1.2
2.8
49.9
46.3
Minor BPS
66.6
0.52
1.3
69.84
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030515
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037373
132086092 - 132114924
28833