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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1321086_1323886_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1321086 - 1323886
Intron Length:
2801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTTCTTCTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
88
0.85
0.8
80.8
36.8
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
56.1
0.19
1.7
68.77
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004917
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005096
1303326 - 1324123
20798