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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13231378_13231740_R

Intron Information:

Intron Rank:
144152
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
13231378 - 13231740
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTTGTAC
5'SS Class:
weak_major
3'SS Sequence:
TCTGATTGTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTCTGAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57
0.17
1.3
55.5
38.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
70
0.45
1
64.7
41.1
Minor 5ss
38.6
-1.3
3.1
50.3
46.3
Minor BPS
59.6
0.38
2.3
87.23
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024818
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027960
13221717 - 13233078
11362