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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13231921_13233006_R

Intron Information:

Intron Rank:
144153
Intron Class:
major
Intron Phase:
Intron Coordinates:
13231921 - 13233006
Intron Length:
1086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CATTCCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTCAT
U12 Branch Point Sequence:
CATTCCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.6
31.8
Major BPS
69.6
0.49
1.3
73.6
41.8
Major PPT
82.8
0.74
0.8
76.2
32.1
Minor 5ss
35.5
-1.6
3.3
47.5
42.3
Minor BPS
71.4
0.67
1.6
76.43
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024818
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027960
13221717 - 13233078
11362